Publications

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Google Scholar Profile // ORCID Profile

Publications 

1. LE Stopfer*, NJ Rettko*, O Leddy, JM Mesfin, E Brown, S Winski, B Bryson, JA Wells, and FM White. MEK inhibition enhances presentation of targetable MHC-I tumor antigens in mutant melanomas. In review, 2022. bioRxiv 475285. *Co-first authors. bioRxiv link.

2. AM Jaeger, LE Stopfer, EA Sanders, DA Sandel, WA Freed-Pastor, WM Rideout III, S Naranjo, T Fessenden, PS Winter, RE Kohn, J Schenkel, S Shanahan, AK Shalek, S Spranger, FM White, and T Jacks. Deciphering the tumor-specific immunopeptidome in vivo with genetically engineered mouse models. In review, 2021. bioRxiv 450516. bioRxiv link.

3. LE Stopfer, AD D’Souza, and FM White. 1,2,3, MHC: a review of mass-spectrometry-based immunopeptidomics methods for relative and absolute quantification of pMHCs. Immuno-Oncology Technol. Oct. 2021. Publication link.

4. LE Stopfer, AS Gajadhar, B Patel, S Gallien, DT Frederick, GM Boland, RJ Sullivan, and FM White. Absolute quantification of tumor antigens using embedded MHC-I isotopologue calibrants. Proc. Natl. Acad. Sci. U.S.A., Aug. 2021. Publication link. ProteomeXchange. PMID: 34497125

5. LE Stopfer, CT Flower, AS Gajadhar, B Patel, S Gallien, D Lopez-Ferrer, and FM White. High-density, targeted monitoring of tyrosine phosphorylation reveals activated signaling networks in human tumors.  Cancer Research, May 2021. Publication link. ProteomeXchange. PMID: 3350940

6. LE Stopfer, JE Conage-Pough, and FM White. Quantitative Consequences of Protein Carriers in Immunopeptidomics and Tyrosine Phosphorylation MS2 Analyses. Mol. Cell. Proteomics, May 2021. Publication link. ProteomeXchange. PMID: 34052394

7. LE Stopfer, JM Mesfin, BA Joughin, DL Lauggenburger, and FM White. Multiplexed relative and absolute quantitative immunopeptidomics reveals MHC I repertoire alterations induced by CDK4/6 inhibition. Nature Commun, June 2020. Publication link. ProteomeXchange. PMID: 32488085

8. A Jaeger, L Stopfer, SL Giorgio Gaglia, S Santagata, NU Lin, J Trepel, F White, T Jacks, L Whitesell, and S Lindquist. Rebalancing protein homeostasis enhances tumor antigen presentation, Clinical Cancer Research, June 2019. Publication link. ProteomeXchange. PMID: 31213460

9. LS Prahl, PF Bangasser, LE Stopfer, M Hemmat, FM White, SS Rosenfeld, and DJ Odde. Microtubule-based control of motor-clutch system mechanics in glioma cell migration, Cell Reports, Nov 2018. Publication link. Proteome Xchange. PMID: 30485822

10. J Wilson, E Kefaloyianni, L Stopfer, C Harrison, V Sabbisetti, E Fraenkel, D Lauffenburger and A Herrlich. Functional Genomics Approach Identifies Novel Signaling Regulators of TGFα Ectodomain Shedding, MCR, Nov. 2017. Publication link. PMID: 29018056

11. S. Laufer, K. Rasske, L Stopfer, C. Kurzynski, T. Abbott, M. Platner, J. Towles, and CM Pugh. Fabric Force Sensors for the Clinical Breast Examination Simulator, MMVR, 2016. Publication link. PMID: 27046577

12.  F Liu, D Lagares, K. Choi, L Stopfer, A Marinkovic, V Vrbanac, C Probst, S Hiemer, T Sisson, J Horowitz, I Rosas, L Fredenburgh, C Feghali-Bostwick, X Varelas, A Tager, and D Tschumperlin. Mechanosignaling through YAP and TAZ drive fibroblast activation and fibrosis. AM J PHYSIOL-LUNG C, Dec. 2014. Publication link. PMID: 25502501

13. MJ Carroll, LE Stopfer, PK Kreeger. A simplified culture system to examine soluble factor interactions between mammalian cells, Chem Commun, 2013. Publication link. PMID: 24233400